| New York Mets |
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| Farm System (Click the team name to view statistics) | |||||
| Class | Team | League | Manager | Hitting Coach | Pitching Coach |
| MAJ | New York Mets | National | Terry Collins | Dave Hudgens | Dan Warthen |
| AAA | Buffalo Bisons | International | Tim Teufel | Mike Easler | Ricky Bones |
| AA | Binghamton Mets | Eastern | Wally Backman | Luis Natera | Marc Valdes |
| HiA | St. Lucie Mets | Florida State | Pedro Lopez | Joel Fuentes | Phil Regan |
| LoA | Savannah Sand Gnats | South Atlantic | Ryan Ellis | Benny Distefano | Glenn Abbott |
| SS | Brooklyn Cyclones | New York-Penn | Rich Donnelly | Bobby Malek | Frank Viola |
| R | Kingsport Mets | Appalachian | Frank Fultz | Luis Rivera | Jonathan Hurst |
| R | GCL Mets | Gulf Coast | Luis Rojas | Yunir Garcia | Mark Brewer |
| R | DSL Mets1 | Dominican | Jose Leger | E. Chavez/M. Martinez | Benjamin Marte |
| R | DSL Mets2 | Dominican | Alberto Castillo | D. Davalillo/L. Hernandez | Francis Martinez |
| Organization Reports | ||
| Correspondent: Steve Popper, Bergen (N.J.) Record | ||
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2011 Organization Reports 2010 Organization Reports 2009 Organization Reports 2008 Organization Reports 2007 Organization Reports 2006 Organization Reports |
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Top Prospects (Click the year to view the top 10 prospects) |
Draft History (Click the year to view the picks) |
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| Year | Top Prospect | Position | Year | Top Pick | |
| 1992 | Todd Hundley | C | 1992 | Preston Wilson | |
| 1993 | Bobby Jones | RHP | 1993 | Kirk Presley | |
| 1994 | Bill Pulsipher | LHP | 1994 | Paul Wilson | |
| 1995 | Bill Pulsipher | LHP | 1995 | Ryan Jaroncyk | |
| 1996 | Paul Wilson | RHP | 1996 | Robert Stralton | |
| 1997 | Jay Payton | OF | 1997 | Geoff Goetz | |
| 1998 | Grant Roberts | RHP | 1998 | Jason Tyner | |
| 1999 | Alex Escobar | OF | 1999 | Neal Musser | |
| 2000 | Alex Escobar | OF | 2000 | Billy Traber | |
| 2001 | Alex Escobar | OF | 2001 | Aaron Heilman | |
| 2002 | Aaron Heilman | RHP | 2002 | Scott Kazmir | |
| 2003 | Jose Reyes | SS | 2003 | Lastings Milledge | |
| 2004 | Kaz Matsui | SS | 2004 | Phillip Humber | |
| 2005 | Lastings Millege | OF | 2005 | Mike Pelfrey | |
| 2006 | Lastings Millege | OF | 2006 | Kevin Mulvey | |
| 2007 | Mike Pelfrey | RHP | 2007 | Eddie Kunz | |
| 2008 | Fernando Martinez | OF | 2008 | Ike Davis | |
| 2009 | Fernando Martinez | OF | 2009 | Steve Matz | |
| 2010 | Jenrry Mejia | RHP | 2010 | Matt Harvey | |
| 2011 | Jenrry Mejia | RHP | * did not sign | ||
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