| Florida Marlins |
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| Farm System (Click the team name to view statistics) | |||||
| Class | Team | League | Manager | Hitting Coach | Pitching Coach |
| MAJ | Florida Marlins | National | Fredi Gonzalez | Jim Presley | Mark Wiley |
| AAA | Albuquerque Isotopes | Pacific Coast | Dean Treanor | Steve Phillips | Rich Gale |
| AA | Carolina Mudcats | Southern | Matt Raleigh | Theron Todd | Scott Mitchell |
| HiA | Jupiter Hammerheads | Florida State | Brandon Hyde | Reid Cornelius | Anthony Iapoce |
| LoA | Greensboro Grasshoppers | South Atlantic | Edwin Rodriguez | John Duffy | Jorge Hernandez |
| SS | Jamestown Jammers | New York-Penn | Darin Everson | Charlie Corbell, Jr. | Johnny Rodriguez |
| R | GCL Marlins | Gulf Coast | Doc Watson | Jeff Schwarz | Cesar Haines |
| R | DSL Marlins | Dominican | Ray Nunez | Jeff Schwarz | Edison Santana |
| Organization Reports | ||
| Correspondent: Mike Berardino, The Sun-Sentinel (Fort Lauderdale) | ||
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2009 Organization Reports 2008 Organization Reports 2007 Organization Reports 2006 Organization Reports |
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Top Prospects (Click the year to view the top 10 prospects) |
Draft History (Click the year to view the picks) |
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| Year | Top Prospect | Position | Year | Top Pick | |
| 1993 | Nigel Wilson | OF | 1992 | Charles Johnson | |
| 1994 | Charles Johnson | C | 1993 | Marc Valdes | |
| 1995 | Charles Johnson | C | 1994 | Josh Booty | |
| 1996 | Edgar Renteria | SS | 1995 | Jaime Jones | |
| 1997 | Felix Heredia | LHP | 1996 | Mark Kotsay | |
| 1998 | Mark Kotsay | OF | 1997 | Aaron Akin | |
| 1999 | A.J. Burnett | RHP | 1998 | Chip Ambres | |
| 2000 | A.J. Burnett | RHP | 1999 | Josh Beckett | |
| 2001 | Josh Beckett | RHP | 2000 | Adrian Gonzalez | |
| 2002 | Josh Beckett | RHP | 2001 | Garrett Berger | |
| 2003 | Miguel Cabrera | 3B | 2002 | Jeremy Hermida | |
| 2004 | Jeremy Hermida | OF | 2003 | Jeff Allison | |
| 2005 | Jeremy Hermida | OF | 2004 | Taylor Tankersley | |
| 2006 | Jeremy Hermida | OF | 2005 | Chris Volstad | |
| 2007 | Chris Volstad | RHP | 2006 | Brett Sinkbeil | |
| 2008 | Chris Volstad | RHP | 2007 | Matt Dominguez | |
| 2009 | Cameron Maybin | OF | 2008 | Kyle Skipworth | |
| 2009 | Chad James | ||||
| * did not sign | |||||
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