| Toronto Blue Jays |
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| Farm System (Click the team name to view statistics) | |||||
| Class | Team | League | Manager | Hitting Coach | Pitching Coach |
| MAJ | Toronto Blue Jays | American | John Farrell | Dwayne Murphy | Bruce Walton |
| AAA | Las Vegas 51s | Pacific Coast | Marty Brown | Chad Mottola | Tom Signore |
| AA | New Hampshire Fisher Cats | Eastern | Sal Fasano | Justin Mashore | Pete Walker |
| HiA | Dunedin Blue Jays | Florida State | Clayton McCullough | Ralph Dickenson | Darold Knowles |
| LoA | Lansing Lugnuts | Midwest | Mike Redmond | John Tamargo Jr. | Vince Horsman |
| SS | Vancouver Canadians | Northwest | John Schneider | Dave Pano | Jim Czajkowski |
| R | Bluefield Blue Jays | Appalachian | Dennis Holmberg | Kenny Graham | Antonio Caceres |
| R | GCL Blue Jays | Gulf Coast | Omar Malave | P. Elliott/D. Solano | John Wesley |
| R | DSL Blue Jays | Dominican | Miguel Bernard | O. Martinez/L. Rodriguez | Oswald Peraza |
| Organization Reports | ||
| Correspondent: Larry Millson, Toronto | ||
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2011 Organization Reports 2010 Organization Reports 2009 Organization Reports 2008 Organization Reports 2007 Organization Reports 2006 Organization Reports |
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Top Prospects (Click the year to view the top 10 prospects) |
Draft History (Click the year to view the picks) |
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| Year | Top Prospect | Position | Year | Top Pick | |
| 1992 | Derek Bell | OF | 1992 | Shannon Stewart | |
| 1993 | Carlos Delgado | C | 1993 | Chris Carpenter | |
| 1994 | Alex Gonzalez | SS | 1994 | Kevin Witt | |
| 1995 | Shawn Green | OF | 1995 | Roy Halladay | |
| 1996 | Roy Halladay | RHP | 1996 | Billy Koch | |
| 1997 | Roy Halladay | RHP | 1997 | Vernon Wells | |
| 1998 | Roy Halladay | RHP | 1998 | Felipe Lopez | |
| 1999 | Roy Halladay | RHP | 1999 | Alex Rios | |
| 2000 | Vernon Wells | OF | 2000 | Miguel Negron | |
| 2001 | Vernon Wells | OF | 2001 | Gabe Gross | |
| 2002 | Josh Phelps | C | 2002 | Russ Adams | |
| 2003 | Dustin McGrowan | RHP | 2003 | Aaron Hill | |
| 2004 | Alex Rios | OF | 2004 | David Purcey | |
| 2005 | Brandon League | RHP | 2005 | Ricky Romero | |
| 2006 | Dustin McGowan | RHP | 2006 | Travis Snider | |
| 2007 | Adam Lind | OF | 2007 | Kevin Ahrens | |
| 2008 | Travis Snider | OF | 2008 | David Cooper | |
| 2009 | Travis Snider | OF | 2009 | Chad Jenkins | |
| 2010 | Zach Stewart | RHP | 2010 | Deck McGuire | |
| 2011 | Kyle Drabek | RHP | * did not sign | ||
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