| Toronto Blue Jays |
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| Farm System (Click the team name to view statistics) | |||||
| Class | Team | League | Manager | Hitting Coach | Pitching Coach |
| MAJ | Toronto Blue Jays | American | John Gibbons | Gary Denbo | Brad Arnsberg |
| AAA | Syracuse Chiefs | International | Doug Davis | Al LeBeouf | Rick Langford |
| AA | New Hampshire Fisher Cats | Eastern | Gary Cathcart | Ken Joyce | Dave LaRoche |
| HiA | Dunedin Blue Jays | Florida State | Omar Malave | Paul Elliott | Darold Knowles |
| LoA | Lansing Lugnuts | Midwest | Clayton McCulloch | Justin Mashore | Tom Signore |
| SS | Auburn Doubledays | New York-Penn | Dennis Holmberg | Charlie Poe | Antonio Caceres |
| R | GCL Blue Jays | Gulf Coast | Dave Pano | Danny Solano | Vince Horsman |
| R | DSL Blue Jays1 | Dominican | Jose Escobar | Emilio De Los Santos | Oswaldo Peraza |
| R | DSL Blue Jays2 | Dominican | Cesar Martin | Hedbertt Hurtado | Juan Perez |
| Organization Reports | ||
| Correspondent: Larry Millson, The Globe and Mail, Toronto | ||
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2009 Organization Reports 2008 Organization Reports 2007 Organization Reports 2006 Organization Reports |
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Top Prospects (Click the year to view the top 10 prospects) |
Draft History (Click the year to view the picks) |
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| Year | Top Prospect | Position | Year | Top Pick | |
| 1992 | Derek Bell | OF | 1992 | Shannon Stewart | |
| 1993 | Carlos Delgado | C | 1993 | Chris Carpenter | |
| 1994 | Alex Gonzalez | SS | 1994 | Kevin Witt | |
| 1995 | Shawn Green | OF | 1995 | Roy Halladay | |
| 1996 | Roy Halladay | RHP | 1996 | Billy Koch | |
| 1997 | Roy Halladay | RHP | 1997 | Vernon Wells | |
| 1998 | Roy Halladay | RHP | 1998 | Felipe Lopez | |
| 1999 | Roy Halladay | RHP | 1999 | Alex Rios | |
| 2000 | Vernon Wells | OF | 2000 | Miguel Negron | |
| 2001 | Vernon Wells | OF | 2001 | Gabe Gross | |
| 2002 | Josh Phelps | C | 2002 | Russ Adams | |
| 2003 | Dustin McGrowan | RHP | 2003 | Aaron Hill | |
| 2004 | Alex Rios | OF | 2004 | David Purcey | |
| 2005 | Brandon League | RHP | 2005 | Ricky Romero | |
| 2006 | Dustin McGowan | RHP | 2006 | Travis Snider | |
| 2007 | Adam Lind | OF | 2007 | Kevin Ahrens | |
| 2008 | Travis Snider | OF | 2008 | David Cooper | |
| 2009 | Travis Snider | OF | 2009 | Chad Jenkins | |
| * did not sign | |||||