| 1. Clay Buchholz, rhp, Double-A Portland (Red Sox) |
| 2. Justin Upton, of, Double-A Mobile (Diamondbacks) |
| 3. Andrew Miller, lhp, Double-A Erie (Tigers) |
| 4. Johnny Cueto, rhp, high Class A Sarasota (Reds) |
| 5. Clayton Kershaw, lhp, low Class A Great Lakes (Dodgers) |
| 6. Chris Mason, rhp, Double-A Montgomery (Devil Rays) |
| 7. Homer Bailey, rhp, Triple-A Louisville (Reds) |
| 8. Radhames Liz, rhp, Double-A Bowie (Orioles) |
| 9. Yovani Gallardo, rhp, Triple-A Nashville (Brewers) |
| 10. Shaun Garceau, rhp, low Class A Quad Cities (Cardinals) |
| 11. Colby Rasmus, of, Double-A Springfield (Cardinals) |
| 12. Joba Chamberlain, rhp, high Class A Tampa (Yankees) |
| 13. Wade LeBlanc, lhp, high Class A Lake Elsinore (Padres) |
| 14. Jason Hammel, rhp, Triple-A Durham (Devil Rays) |
| 15. Adam Jones, of, Triple-A Tacoma (Mariners) |
| 16. Taylor Teagarden, c, high Class A Bakersfield (Rangers) |
| 17. Mitch Hilligoss, of, low Class A Charleston (Yankees) |
| 18. Trevor Plouffe, ss, Double-A New Britain (Twins) |
| 19. Chase Headley, 3b, Double-A San Antonio (Padres) |
| 20. Matt Gamel, 3b, high Class A Brevard County (Brewers) |
| Stephen Head, 1b, high Class A Kinston (Indians) |
| Yoslan Herrera, rhp, Double-A Altoona (Pirates) |
| Kyle Sleeth, rhp, high Class A Lakeland (Tigers) |
| Jeff Samardzija, rhp, high Class A Daytona (Cubs) |
| Charlie Haeger, rhp/Heath Phillips, lhp, Triple-A Charlotte (White Sox) |
| Anthony Ortega, rhp, high Class A Rancho Cucamonga (Angels) |
| Tyler Herron, rhp, low Class A Quad Cities (Cardinals) |
| Tyler Chambliss, rhp, low Class A Burlington (Royals) |
| Roman Pena, of, low Class A Lake County (Indians) |
| Ryan Raburn, of, Triple-A Toledo (Tigers) |