| 1. Tim Lincecum, rhp, Triple-A Fresno (Giants). |
| 2. Jacoby Ellsbury, of, Double-A Portland (Red Sox). |
| 3. Tommy Hanson, rhp, low Class A Rome (Braves). |
| 4. Billy Butler, of, Triple-A Omaha (Royals). |
| 5. Nick Adenhart, rhp, Double-A Arkansas (Angels). |
| 6. Virgil Vasquez, rhp, Triple-A Toledo (Tigers). |
| 7. Brandon Hynick, rhp, high Class A Modesto (Rockies). |
| 8. Phil Hughes, rhp, Triple-A Scranton/Wilkes-Barre (Yankees). |
| 9. Luke Hochevar, Double-A Wichita (Royals). |
| 10. Danny Putnam, of, Double-A Midland (Athletics). |
| 11. Joe Mather, 1b/of, Double-A Springfield (Cardinals). |
| 12. Chris Valaika, ss, low Class A Dayton (Reds). |
| 13. Chris Carter, 1b, Triple-A Tucson (Diamondbacks). |
| 14. Justin Upton, of, high Class A Visalia (Diamondbacks). |
| 15. Cedric Hunter, of, low Class A Fort Wayne (Padres). |
| 16. Jamie D'Antona, 3b/c, Triple-A Tucson (Diamondbacks). |
| 17. Ryan Braun, 3b, Triple-A Nashville (Brewers). |
| 18. Lars Anderson, 1b, low Class A Greenville (Red Sox). |
| 19. Adam Cowart, rhp, low Class A Augusta (Giants). |
| 20. Daryl Thompson, rhp, low Class A Dayton (Reds). |
| Mike Costanzo, 3b, Double-A Reading (Phillies). |
| Trevor Crowe, of, Double-A Akron (Indians). |
| Tyler Lumsden, lhp, Triple-A Omaha (Royals). |
| Preston Mattingly, ss, low Class A Great Lakes (Dodgers). |
| Joey Votto, 1b, Triple-A Louisville (Reds). |
| Brad Nelson, 1b/of, Triple-A Nashville (Brewers). |
| Carlos Fisher, rhp, high Class A Sarasota (Reds). |