| Pos. | Player | Independent Team | MLB Team |
| C | Chris Coste | Fargo-Moorhead (Northern) | Phillies |
| 1B | Bryan Myrow | Winnipeg (Northern) | Padres |
| 2B | No candidate | ||
| SS | Rey Ordonez | St. Paul (Northern) | Mets |
| 3B | Luis Lopez | St. Paul (Northern) | Blue Jays |
| OF | Kevin Millar | St. Paul (Northern) | Red Sox |
| OF | Jim Rushford | Duluth (Northern) | Brewers |
| OF | Morgan Burkhart | Richmond (Frontier) | Red Sox |
| SP | Brian Tollberg | Chillicothe (Frontier) | Padres |
| SP | Bobby Madritsch | Winnipeg (Northern) | Mariners |
| SP | Jason Simontacchi | Springfield (Frontier) | Cardinals |
| RP | Edwar Ramirez | Edinburg (United) | Yankees |
| RP | George Sherrill | Winnipeg (Northern) | Mariners |
| RP | Kerry Ligtenberg | Minneapolis (Prairie) | Braves |
| RP | Matt Miller | Greenville (Big South) | Indians |
| RP | Brendan Donnelly | Ohio Valley (Frontier) | Angels |
| RP | Ben Weber | Salinas (Western) | Angels |
| RP | Josh Kinney | River City (Frontier) | Cardinals |
| RP | Joe Thatcher | River City (Frontier) | Padres |
| RP | Jeff Zimmerman | Winnipeg (Northern) | Rangers |