Baseball America
| Minnesota Twins |
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| Farm System (Click the team name to view statistics) | |||||
| Class | Team | League | Manager | Hitting Coach | Pitching Coach |
| MAJ | Minnesota Twins | American League | Ron Gardenhire | unknown | Rick Anderson |
| AAA | Rochester Red Wings | International League | Gene Glynn | unknown | Marty Mason |
| AA | New Britain Rock Cats | Eastern League | Jeff Smith | unknown | Stu Cliburn |
| HiA | Fort Myers Miracle | Florida State League | Doug Mientkiewicz | Jim Dwyer | Ivan Arteaga |
| LoA | Cedar Rapids Kernels | Midwest League | Jake Mauer | Tommy Watkins | Gary Lucas |
| R | Elizabethton Twins | Appalachian League | Ray Smith | Jeff Reed | Ivan Arteaga |
| R | DSL Twins | Dominican Summer League | Jimmy Alvarez | unknown | Manny Santana |
| R | GCL Twins | Gulf Coast League | Ramon Borrego | Milt Cuyler | Luis Ramirez |
| Organization Reports | ||
| Correspondent: Phil Miller, St. Paul, Minn. | ||
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2012 Organization Reports 2011 Organization Reports 2010 Organization Reports 2009 Organization Reports 2008 Organization Reports 2007 Organization Reports 2006 Organization Reports |
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Top Prospects (Click the year to view the top 10 prospects) |
Draft History (Click the year to view the picks) |
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| Year | Top Prospect | Position | Year | Top Pick | Position | |
| 1999 | Michael Cuddyer | 3B | 2002 | Denard Span | OF | |
| 2001 | Adam Johnson | RHP | 2003 | Matt Moses | 3B | |
| 2002 | Joe Mauer | C | 2004 | Trevor Plouffe | SS | |
| 2003 | Joe Mauer | C | 2005 | Matt Garza | RHP | |
| 2004 | Joe Mauer | C | 2006 | Chris Parmelee | OF/1B | |
| 2005 | Joe Mauer | C | 2007 | Ben Revere | OF | |
| 2006 | Francisco Liriano | LHP | 2008 | Aaron Hicks | OF | |
| 2007 | Matt Garza | RHP | 2009 | Kyle Gibson | RHP | |
| 2008 | Nick Blackburn | RHP | 2010 | Alex Wimmers | RHP | |
| 2009 | Aaron Hicks | OF | 2011 | Levi Michael | SS | |
| 2010 | Aaron Hicks | OF | 2012 | Byron Buxton | OF | |
| 2011 | Kyle Gibson | RHP | 2013 | Kohl Stewart | RHP | |