| TOP 50 FRESHMEN |
| All draft references to 2006 unless otherwise noted |
| Rk. | Player, Pos., College | B-T | Ht. | Wt. | Last Drafted (Round) |
| 1. | Lonnie Chisenhall, 3b/rhp, South Carolina | L-R | 6-1 | 185 | Pirates (11) |
| 2. | Sean Black, rhp, Seton Hall | R-R | 6-3 | 185 | Nationals (2) |
| 3. | Aaron Miller, of, Baylor | L-L | 6-3 | 200 | Rockies (11) |
| 4. | Nick Fuller, rhp, South Carolina | R-R | 6-1 | 195 | Devil Rays (3) |
| 5. | Alex White, rhp/1b, North Carolina | R-R | 6-3 | 182 | Dodgers (14) |
| 6. | Kyle Gibson, rhp, Missouri | R-R | 6-5 | 175 | Phillies (36) |
| 7. | Dustin Dickerson, 1b, Baylor | L-R | 6-4 | 205 | Nationals (15) |
| 8. | Wade Kapteyn, rhp, Evansville | R-R | 6-5 | 220 | White Sox (20) |
| 9. | Mark Sobolewski, 3b, Miami | R-R | 6-0 | 193 | Astros (20) |
| 10. | Dylan Brown, of, Oklahoma State | R-R | 6-2 | 200 | Never |
| 11. | Devin Shepherd, of, Oklahoma | R-R | 6-3 | 230 | Twins (5) |
| 12. | Robert Stock, c, Southern California | L-R | 6-3 | 215 | Never |
| 13. | Grant Green, ss, Southern California | R-R | 6-2 | 165 | Padres (14) |
| 14. | Charles Brewer, rhp, UCLA | R-R | 6-4 | 185 | Angels (18) |
| 15. | Russell Moldenhauer, 3b, Texas | L-R | 6-0 | 200 | Angels (3) |
| 16. | Curtis Dupart, of, Georgia Tech | R-R | 6-3 | 185 | Rockies (31) |
| 17. | Kendall Volz, rhp, Baylor | R-R | 6-4 | 225 | Diamondbacks (50) |
| 18. | Josh Thrailkill, rhp, Clemson | R-R | 6-4 | 185 | Phillies (34) |
| 19. | Khris Davis, of, Cal State Fullerton | R-R | 5-11 | 195 | Nationals (29) |
| 20. | Jason Stoffel, rhp, Arizona | R-R | 6-2 | 200 | Never |
| 21. | Jeff Inman, rhp, Stanford | R-R | 6-2 | 185 | Royals (19) |
| 22. | *Chris Dominguez, 3b, Louisville | R-R | 6-4 | 240 | Rangers '05 (17) |
| 23. | Andy Oliver, lhp, Oklahoma State | L-L | 6-2 | 200 | Twins (17) |
| 24. | Eric Erickson, lhp, Miami | L-L | 5-11 | 175 | Yankees (43) |
| 25. | Gavin Brooks, lhp, UCLA | L-L | 6-3 | 195 | Never |
| 26. | Preston Claiborne, 1b/rhp, Tulane | R-R | 6-3 | 220 | Pirates (23) |
| 27. | Jared Mitchell, of, Louisiana State | L-L | 6-0 | 185 | Twins (10) |
| 28. | Ryan Jackson, ss, Miami | R-R | 6-1 | 160 | Never |
| 29. | Carmine Giardina, lhp, Central Florida | R-L | 6-3 | 210 | Red Sox (28) |
| 30. | Josh Prince, ss, Texas | R-R | 6-1 | 170 | Never |
| 31. | Michael Demperio, 2b, Texas | R-R | 5-11 | 165 | Never |
| 32. | Cole Figueroa, ss, Florida | L-R | 5-10 | 180 | Blue Jays (9) |
| 33. | Mike Minor, lhp, Vanderbilt | L-L | 6-3 | 175 | Devil Rays (13) |
| 34. | Nick Hernandez, lhp, Tennessee | L-L | 6-3 | 187 | Athletics (32) |
| 35. | Billy Bullock, rhp, Florida | R-R | 6-6 | 225 | Dodgers (20) |
| 36. | Nathan Karns, rhp, North Carolina State | R-R | 6-4 | 225 | Astros (10) |
| 37. | Graham Stoneburner, rhp/ss, Clemson | R-R | 6-0 | 175 | Never |
| 38. | Mike Leake, rhp/if, Arizona State | R-R | 6-0 | 160 | Athletics (7) |
| 39. | Kyle Smith, rhp, Kent State | R-R | 6-6 | 195 | Never |
| 40. | Jared Baehl, 3b/rhp, Evansville | R-R | 6-3 | 215 | Mariners (14) |
| 41. | Sam Brown, rhp, North Carolina State | R-R | 6-3 | 202 | Nationals (7) |
| 42. | Toby Gerhart, of, Stanford | R-R | 6-1 | 215 | Never |
| 43. | Ross Smith, of, Auburn | R-R | 6-2 | 184 | Cardinals (32) |
| 44. | Kevin Chapman, lhp, Florida | L-L | 6-3 | 185 | Tigers (42) |
| 45. | Brad Boxberger, rhp, Southern California | R-R | 6-2 | 180 | Royals (20) |
| 46. | Riley Cooper, of, Florida | R-R | 6-3 | 206 | Phillies (15) |
| 47. | Tyler Henry, rhp, Kentucky | L-R | 6-2 | 180 | Never |
| 48. | Taylor Thompson, rhp, Auburn | R-R | 6-6 | 215 | Never |
| 49. | Luis Tovar, ss, UC Irvine | R-R | 6-2 | 183 | Never |
| 50. | Shawn Tolleson, rhp, Baylor | R-R | 6-2 | 225 | Never |
| *denotes redshirt freshman |