| Pick | Overall | Team | Player | Position | School | State |
| 1 | 962 | Pittsburgh Pirates | David Jagoditsh | RHP | Pima (Ariz.) CC | Ariz. |
| 2 | 963 | Seattle Mariners | Ryan Hawthorne | LHP | Loyola Marymount | Calif. |
| 3 | 964 | Arizona Diamondbacks | Alex Vetter | RHP | Feather River (Calif.) JC | Calif. |
| 4 | 965 | Baltimore Orioles | Ryan Meyer | RHP | Oviedo (Fla.) HS | Fla. |
| 5 | 966 | Kansas City Royals | Nick Piscotty | RHP | Amador Valley HS, Pleasanton, Calif. | Calif. |
| 6 | 967 | Washington Nationals | Billy Burns | OF | Mercer | Ga. |
| 7 | 968 | Cleveland Indians | Cole Pitts | RHP | Colquitt County HS, Moultrie, Ga. | Ga. |
| 8 | 969 | Chicago Cubs | Pete Levitt | RHP | Mount Olive (N.C.) | N.C. |
| 9 | 970 | Houston Astros | Zach Dando | RHP | Central Arizona JC | Ariz. |
| 10 | 971 | Milwaukee Brewers | Alfredo Rodriguez | SS | Maryland | Md. |
| 11 | 972 | New York Mets | Carlos Leyva | SS | Cal State Dominguez Hills | Calif. |
| 12 | 973 | Florida Marlins | Sharif Othman | C | California Baptist | Calif. |
| 13 | 974 | Los Angeles Dodgers | Hunter Jennings | OF | Delgado (La.) CC | La. |
| 14 | 975 | Los Angeles Angels | John Leonard | RHP | Boston College | Mass. |
| 15 | 976 | Oakland Athletics | Drew Granier | RHP | Louisiana-Monroe | La. |
| 16 | 977 | Detroit Tigers | Brandon Eckerle | OF | Michigan State | Mich. |
| 17 | 978 | Colorado Rockies | Jarod Berggren | OF | Northern Colorado | Colo. |
| 18 | 979 | Toronto Blue Jays | Kevin Pillar | OF | Cal State Dominguez Hills | Calif. |
| 19 | 980 | St. Louis Cardinals | Jonathan Keener | C | Cal State Dominguez Hills | Calif. |
| 20 | 981 | Chicago White Sox | Brent Tanner | C | South Alabama | Ala. |
| 21 | 982 | Boston Red Sox | Julius Gaines | SS | Luella HS, Locust Grove, Ga. | Ga. |
| 22 | 983 | San Diego Padres | Kyle Brule | RHP | Oklahoma Baptist | Okla. |
| 23 | 984 | Texas Rangers | Sam Robinson | LHP | Miami | Fla. |
| 24 | 985 | Cincinnati Reds | Mike Dennhardt | RHP | Boston College | Mass. |
| 25 | 986 | Atlanta Braves | Matt Kimbrel | RHP | Shelton State (Ala.) CC | Ala. |
| 26 | 987 | San Francisco Giants | Mike Mergenthaler | OF | Richmond | Va. |
| 27 | 988 | Minnesota Twins | Dylan Chavez | LHP | American River (Calif.) JC | Calif. |
| 28 | 989 | New York Yankees | Garrett Nuss | RHP | Mount Dora HS, Sorrento, Fla. | Fla. |
| 29 | 990 | Tampa Bay Rays | Ryan Turner | RHP | Tarleton State (Texas) | Texas |
| 30 | 991 | Philadelphia Phillies | Greg Herbst | RHP | St. Mary's (Texas) | Texas |