Baseball America
Toronto Blue Jays
Players signed indicated in Bold
| Round | Overall | Player | Position | School | State |
| 1 | 11 | Deck McGuire | RHP | Georgia Tech | Ga. |
| 1s | 34 | Aaron Sanchez | RHP | Barstow (Calif.) HS | Calif. |
| 1s | 38 | Noah Syndergaard | RHP | Legacy HS, Mansfield, Texas | Texas |
| 1s | 41 | Asher Wojciechowski | RHP | The Citadel | S.C. |
| 2 | 61 | Griffin Murphy | LHP | Redlands (Calif.) East Valley HS | Calif. |
| 2 | 69 | Kellen Sweeney | 3B | Jefferson HS, Cedar Rapids, Iowa | Iowa |
| 2 | 80 | Justin Nicolino | LHP | University HS, Orlando | Fla. |
| 3 | 93 | Chris Hawkins | 3B | North Gwinnett HS, Suwanee, Ga. | Ga. |
| 3s | 113 | Marcus Knecht | OF | Connors State (Okla.) JC | Okla. |
| 4 | 126 | Sam Dyson | RHP | South Carolina | S.C. |
| 5 | 156 | Dickie Joe Thon | SS | Academia Perpetio Socorro, San Juan, P.R. | P.R. |
| 6 | 186 | Sean Nolin | LHP | San Jacinto (Texas) JC | Texas |
| 7 | 216 | Mitchell Taylor | LHP | Spring (Texas) HS | Texas |
| 8 | 246 | Logan Ehlers | LHP | Nebraska City (Neb.) HS | Neb. |
| 9 | 276 | Brandon Mims | SS | Smith HS, Carrollton, Texas | Texas |
| 10 | 306 | Tyler Shreve | RHP | Phelps County HS, Redlands, Calif. | Calif. |
| 11 | 336 | Shane Opitz | SS | Heritage HS, Centennial, Colo. | Colo. |
| 12 | 366 | Omar Cotto | OF | Bonneville School, San Juan, P.R. | P.R. |
| 13 | 396 | Tyler Painton | LHP | Centennial HS, Bakersfield, Calif. | Calif. |
| 14 | 426 | Dayton Marze | RHP | Louisiana-Lafayette | La. |
| 15 | 456 | Zak Adams | LHP | Flower Mound (Texas) HS | Texas |
| 16 | 486 | Dalton Pompey | OF | Fraser SS, Mississauga, Ont. | Ontario |
| 17 | 516 | Myles Jaye | RHP | Starrs Mill HS, Fayetteville, Ga. | Ga. |
| 18 | 546 | Kris Bryant | 3B | Bonanza HS, Las Vegas | Nev. |
| 19 | 576 | Travis Garrett | RHP | Cypress (Calif.) JC | Calif. |
| 20 | 606 | Art Charles | LHP | Bakersfield (Calif.) JC | Calif. |
| 21 | 636 | Chris Marlowe | RHP | Navarro (Texas) JC | Texas |
| 22 | 666 | Aaron Westlake | OF | Vanderbilt | Tenn. |
| 23 | 696 | Angel Gomez | OF | Maria Cruz Buitrago HS, San Lorenzo, P.R. | P.R. |
| 24 | 726 | Ronnie Melendez | OF | Cowley County (Kan.) CC | Kan. |
| 25 | 756 | Brando Tessar | RHP | Chaminade HS, West Hills, Calif. | Calif. |
| 26 | 786 | Jay Johnson | LHP | Texas Tech | Texas |
| 27 | 816 | Eric Arce | C | Lakeland (Fla.) HS | Fla. |
| 28 | 846 | Adaric Kelly | RHP | Trinity Christian Academy, Lake Worth, Fla. | Fla. |
| 29 | 876 | Jonathan Jones | OF | Long Beach State | Calif. |
| 30 | 906 | Steve McQuail | 2B | Canisius | N.Y. |
| 31 | 936 | Luis Benitez | RHP | Ashworth HS, Carolina, P.R. | P.R. |
| 32 | 966 | Andy Fermin | 2B | Chipola (Fla.) JC | Fla. |
| 33 | 996 | Melvin Garcia | OF | Monroe HS, New York | N.Y. |
| 34 | 1026 | Tyler Powell | RHP | Belmont-Abbey (N.C.) | N.C. |
| 35 | 1056 | Dan Barnes | RHP | Princeton | N.J. |
| 36 | 1086 | David Whitehead | RHP | Moeller HS, Cincinnati | Ohio |
| 37 | 1116 | Chad Green | RHP | Effingham (Ill.) HS | Ill. |
| 38 | 1146 | Pierce Rankin | C | Washington | Wash. |
| 39 | 1176 | Nick Vander Tuig | RHP | Oakdale (Calif.) HS | Calif. |
| 40 | 1206 | Brandon Berl | RHP | St. Mary's | Calif. |
| 41 | 1236 | Seth Conner | 3B | Logan-Rogersville HS, Rogersville, Mo. | Mo. |
| 42 | 1266 | Drew Permison | RHP | Towson | Md. |
| 43 | 1296 | Ron Schreurs | LHP | Freedom HS, Orlando | Fla. |
| 44 | 1326 | Mott Hyde | 2B | Calhoun (Ga.) HS | Ga. |
| 45 | 1356 | Phil Diedrick | OF | Pickering HS, Ajax, Ont. | Ontario |
| 46 | 1386 | Connor Smith | RHP | Blessed Trinity SS, Grimsby, Ont. | Ontario |
| 47 | 1416 | Gabriel Romero | RHP | Roosevelt HS, Los Angeles | Calif. |
| 48 | 1446 | Nick Studer | C | St. Michael's College HS, Toronto | Ontario |
| 49 | 1476 | Matt Abraham | 2B | Eckerd (Fla.) | Fla. |
| 50 | 1506 | Kelly Norris-Jones | C | Lambrick Park SS, Victoria, B.C. | British Columbia |