| Pick | Overall | Team | Player | Position | School | State |
| 1 | 922 | Washington Nationals | J.J. Sferra | OF | Nevada-Las Vegas | Nev. |
| 2 | 923 | Seattle Mariners | Clint Dempster | LHP | Mississippi Gulf Coast JC | Miss. |
| 3 | 924 | San Diego Padres | Matt Jackson | RHP | South Alabama | Ala. |
| 4 | 925 | Pittsburgh Pirates | Zach Taylor | OF | Statesboro (Ga.) HS | Ga. |
| 5 | 926 | Baltimore Orioles | Mike Flacco | 3B | CC of Baltimore County-Catonsville (Md.) | Md. |
| 6 | 927 | San Francisco Giants | Diego Seastrunk | C | Rice | Texas |
| 7 | 928 | Atlanta Braves | Derek Wiley | 1B | Belmont | Tenn. |
| 8 | 929 | Cincinnati Reds | Adian Kummet | RHP | St. Scholastica (Minn.) | Minn. |
| 9 | 930 | Detroit Tigers | Andrew Walter | RHP | Cactus HS, Glendale, Ariz. | Ariz. |
| 10 | 931 | Colorado Rockies | Clint Tilford | RHP | Kentucky | Ky. |
| 11 | 932 | Kansas City Royals | Brian Peacock | LHP | Santa Ana (Calif.) JC | Calif. |
| 12 | 933 | Oakland Athletics | Ian Texidor | 3B | Centro Especializado de Educacion Avanzada, Rio Piedras, P.R. | P.R. |
| 13 | 934 | Texas Rangers | Shon Landry | SS | McNeese State | La. |
| 14 | 935 | Cleveland Indians | Raynor Campbell | 3B | Baylor | Texas |
| 15 | 936 | Arizona Diamondbacks | Keith Cantwell | RHP | Seton Hall | N.J. |
| 16 | 937 | Los Angeles Dodgers | Austin King | OF | Jackson State (Tenn.) CC | Tenn. |
| 17 | 938 | Florida Marlins | Joey O'Gara | RHP | Indiana | Ind. |
| 18 | 939 | St. Louis Cardinals | Tyler Bighames | SS | Estero (Fla.) HS | Fla. |
| 19 | 940 | Toronto Blue Jays | Jack Murphy | C | Princeton | N.J. |
| 20 | 941 | Houston Astros | Travis Smink | LHP | Virginia Military Institute | Va. |
| 21 | 942 | Minnesota Twins | Cody Martin | 3B | Stephens County HS, Toccoa, Ga. | Ga. |
| 22 | 943 | Chicago White Sox | Ryan Hamme | OF | Campbell | N.C. |
| 23 | 944 | New York Mets | Mitch Haniger | OF | Archbishop Mitty HS, San Jose | Calif. |
| 24 | 945 | New York Yankees | Judd Golsan | OF | Mountain Brook (Ala.) HS | Ala. |
| 25 | 946 | Milwaukee Brewers | Jose Oviedo | RHP | Miami Dade CC | Fla. |
| 26 | 947 | Philadelphia Phillies | David Doss | C | South Alabama | Ala. |
| 27 | 948 | Boston Red Sox | Tim Webb | LHP | Palm Beach (Fla.) CC | Fla. |
| 28 | 949 | Tampa Bay Rays | Aaron Dott | LHP | Wisconsin-Whitewater | Wis. |
| 29 | 950 | Chicago Cubs | Andrew Clark | 1B | Louisville | Ky. |
| 30 | 951 | Los Angeles Angels | Jordan Whatcott | RHP | Utah | Utah |