| Pick | Overall | Team | Player | Position | School | State |
| 1 | 383 | Tampa Bay Rays | Jason McEachern | RHP | St. Stephens HS, Hickory, N.C. | N.C. |
| 2 | 384 | Pittsburgh Pirates | Seth Gardner | OF | Highland Park HS, Dallas | Texas |
| 3 | 385 | Kansas City Royals | John Flanagan | RHP | Southwestern Illinois JC | Ill. |
| 4 | 386 | Baltimore Orioles | Corey Thomas | 3B | Middleton HS, Tampa | Fla. |
| 5 | 387 | San Francisco Giants | Juan Perez | OF | Western Oklahoma State JC | Okla. |
| 6 | 388 | Florida Marlins | Danny Pertusati | 2B | Damien HS, La Verne, Calif. | Calif. |
| 7 | 389 | Cincinnati Reds | Blaine Howell | LHP | Pensacola (Fla.) JC | Fla. |
| 8 | 390 | Chicago White Sox | Dexter Carter | RHP | Old Dominion | Va. |
| 9 | 391 | Washington Nationals | Blake Stouffer | 2B | Texas A&M | Texas |
| 10 | 392 | Houston Astros | Kyle Godfrey | RHP | Hiwassee (Tenn.) JC | Tenn. |
| 11 | 393 | Texas Rangers | Ed Koncel | SS | Joliet (Ill.) JC | Ill. |
| 12 | 394 | Oakland Athletics | Dan Thomas | RHP | South Florida | Fla. |
| 13 | 395 | St. Louis Cardinals | Mitch Harris | RHP | Navy | Md. |
| 14 | 396 | Minnesota Twins | Michael Harrington | OF | College of Charleston | S.C. |
| 15 | 397 | Los Angeles Dodgers | Lenell McGee | OF | Oakton (Ill.) CC | Ill. |
| 16 | 398 | Milwaukee Brewers | Rob Wooten | RHP | North Carolina | N.C. |
| 17 | 399 | Toronto Blue Jays | Matt Daly | RHP | Hawaii | Hawaii |
| 18 | 400 | Atlanta Braves | Travis Adair | SS | Cleveland State (Tenn.) CC | Tenn. |
| 19 | 401 | Chicago Cubs | Tony Campana | OF | Cincinnati | Ohio |
| 20 | 402 | Seattle Mariners | Ryan Royster | OF | UC Davis | Calif. |
| 21 | 403 | Detroit Tigers | Jared Gayhart | RHP | Rice | Texas |
| 22 | 404 | New York Mets | Scott Shaw | RHP | Illinois | Ill. |
| 23 | 405 | San Diego Padres | Erik Davis | RHP | Stanford | Calif. |
| 24 | 406 | Philadelphia Phillies | B.J. Rosenberg | RHP | Louisville | Ky. |
| 25 | 407 | Colorado Rockies | Erik Wetzel | 2B | Fresno State | Calif. |
| 26 | 408 | Arizona Diamondbacks | Ollie Linton | OF | UC Irvine | Calif. |
| 27 | 409 | Los Angeles Angels | Michael Kohn | RHP | College of Charleston | S.C. |
| 28 | 410 | New York Yankees | Jack Rye | OF | Florida State | Fla. |
| 29 | 411 | Cleveland Indians | Adam Abraham | 3B | Michigan | Mich. |
| 30 | 412 | Boston Red Sox | Tyler Wilson | RHP | Armuchee HS, Rome, Ga. | Ga. |